Package: prior3D 0.1.1

prior3D: 3D Prioritization Algorithm

3D systematic conservation planning, conducting nested prioritization analyses across multiple depth levels and ensuring efficient resource allocation throughout the water column (Doxa et al. 2024 <doi:10.1111/gcb.16268>). It provides a structured workflow designed to address biodiversity conservation and management challenges in the 3 dimensions, such as the incorporation of multiple costs at different depth levels, while facilitating users’ choices and parameterization.

Authors:Christos Adam [aut, cre], Nikolaos Nagkoulis [aut], Aggeliki Doxa [aut]

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prior3D.pdf |prior3D.html✨
prior3D/json (API)
NEWS

# Install 'prior3D' in R:

install.packages('prior3D', repos = c('https://cadam00.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/cadam00/prior3d/issues

Datasets:

biodiv_df - Example biodiversity data.frame

On CRAN:

13 exports 3 stars 1.47 score 82 dependencies 3 scripts 256 downloads

Last updated 10 hours agofrom:37cf51379a. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Sep 17 2024
R-4.5-win	OK	Sep 17 2024
R-4.5-linux	OK	Sep 17 2024
R-4.4-win	OK	Sep 17 2024
R-4.4-mac	OK	Sep 17 2024
R-4.3-win	OK	Sep 17 2024
R-4.3-mac	OK	Sep 17 2024

Exports:coherence Compare_2D_3D evaluate_3D get_biodiv_raster get_depth_raster get_rast plot_3D plot_Compare_2D_3D plot_sumrast prioritize_3D split_rast sumrast terra_jaccard

Dependencies:ape assertthat backports BH cellranger checkmate class classInt cli codetools colorspace cpp11 crayon DBI digest doParallel dplyr e1071 exactextractr fansi farver foreach generics geodiv ggforce ggplot2 glue gridExtra gtable highs hms igraph isoband iterators KernSmooth labeling lattice lifecycle magrittr maps MASS Matrix mgcv munsell nlme pillar pkgconfig polyclip pracma prettyunits prioritizr progress proxy R6 raster rasterdiv RColorBrewer Rcpp RcppArmadillo RcppEigen readxl rematch rlang s2 scales sf slam sp spatial systemfonts terra tibble tidyselect tweenr units utf8 vctrs viridis viridisLite withr wk zoo

Introduction to prior3D

Christos Adam, Nikolaos Nagkoulis, Aggeliki Doxa

Rendered fromIntroduction.Rmdusingknitr::rmarkdownon Sep 17 2024.

Last update: 2024-09-17
Started: 2024-07-31

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Example biodiversity data.frame	biodiv_df
Coherence metrics	coherence
Compare 2D vs 3D prioritization algorithms	Compare_2D_3D
Evaluate prioritization solution over 3D feature distributions	evaluate_3D
Example biodiversity raster	get_biodiv_raster
Example depth raster	get_depth_raster
Read multiple rast files	get_rast
Plot output of prioritize_3D	plot_3D
Plot output of Compare_2D_3D	plot_Compare_2D_3D
Plot sum list of SpatRaster objects.	plot_sumrast
3D prioritization algorithm	prioritize_3D
Split 2D feature distributions into 3D ones	split_rast
Sum list of SpatRaster objects.	sumrast
Jaccard similarity coefficient among two SpatRaster objects	terra_jaccard