Package: prior3D 0.1.5
prior3D: 3D Prioritization Algorithm
Three-dimensional systematic conservation planning, conducting nested prioritization analyses across multiple depth levels and ensuring efficient resource allocation throughout the water column. It provides a structured workflow designed to address biodiversity conservation and management challenges in the 3 dimensions, while facilitating users’ choices and parameterization (Doxa et al. 2025 <doi:10.1016/j.ecolmodel.2024.110919>).
Authors:
prior3D_0.1.5.tar.gz
prior3D_0.1.5.zip(r-4.5)prior3D_0.1.5.zip(r-4.4)prior3D_0.1.5.zip(r-4.3)
prior3D_0.1.5.tgz(r-4.5-any)prior3D_0.1.5.tgz(r-4.4-any)prior3D_0.1.5.tgz(r-4.3-any)
prior3D_0.1.5.tar.gz(r-4.5-noble)prior3D_0.1.5.tar.gz(r-4.4-noble)
prior3D_0.1.5.tgz(r-4.4-emscripten)prior3D_0.1.5.tgz(r-4.3-emscripten)
prior3D.pdf |prior3D.html✨
prior3D/json (API)
NEWS
| # Install 'prior3D' in R: |
| install.packages('prior3D', repos = c('https://cadam00.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/cadam00/prior3d/issues
Pkgdown site:https://cadam00.github.io
- biodiv_df - Example biodiversity data.frame
biodiversityconservationconservation-planningdepthmarine-spatial-planningmultidimensional-environmentsprioritization
Last updated 2 months agofrom:fc3c58de1a. Checks:5 OK, 3 ERROR. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Feb 24 2025 |
| R-4.5-win | OK | Feb 24 2025 |
| R-4.5-mac | ERROR | Feb 24 2025 |
| R-4.5-linux | OK | Feb 24 2025 |
| R-4.4-win | OK | Feb 24 2025 |
| R-4.4-mac | ERROR | Feb 24 2025 |
| R-4.3-win | OK | Feb 24 2025 |
| R-4.3-mac | ERROR | Feb 24 2025 |
Exports:coherenceCompare_2D_3Devaluate_3Dget_biodiv_rasterget_depth_rasterget_rastplot_3Dplot_Compare_2D_3Dplot_sumrastprioritize_3Dsplit_rastsumrastterra_jaccard
Dependencies:apeassertthatbackportsBHcellrangercheckmateclassclassIntclicodetoolscolorspacecpp11crayonDBIdigestdoParalleldplyre1071exactextractrfansifarverforeachgenericsgeodivggforceggplot2gluegridExtragtablehighshmsigraphisobanditeratorsjsonliteKernSmoothlabelinglatticelifecyclemagrittrmapsMASSMatrixmgcvmunsellnlmepillarpkgconfigpolyclippracmaprettyunitsprioritizrprogressproxyR6rasterrasterdivRColorBrewerRcppRcppArmadilloRcppEigenreadxlrematchrlangs2scalessfslamspspatialsystemfontsterratibbletidyselecttwdtwtweenrunitsutf8vctrsviridisviridisLitewithrwkzoo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Example biodiversity data.frame | biodiv_df |
| Coherence metrics | coherence |
| Compare 2D vs 3D prioritization algorithms | Compare_2D_3D |
| Evaluate prioritization solution over 3D feature distributions | evaluate_3D |
| Example biodiversity raster | get_biodiv_raster |
| Example depth raster | get_depth_raster |
| Read multiple rast files | get_rast |
| Plot output of prioritize_3D | plot_3D |
| Plot output of Compare_2D_3D | plot_Compare_2D_3D |
| Plot sum list of SpatRaster objects. | plot_sumrast |
| 3D prioritization algorithm | prioritize_3D |
| Split 2D feature distributions into 3D ones | split_rast |
| Sum list of SpatRaster objects. | sumrast |
| Jaccard similarity coefficient among two SpatRaster objects | terra_jaccard |
