1 Introduction to the prior3D Package (tutorial) | 2 Workflow: Running the analysis | 3 Illustration example | 4 Step-by-Step 3D SCP analysis | 4.1 Step 1: Data Preparation | 4.2 Step 2: 3D Prioritization Algorithm | 4.3 Step 3: Generating Outputs | 5 Comparative Analysis of a 2D and a 3D SCP approach | 6 Spatial Coherence Metrics | 7 References
Package: prior3D 0.1.6
prior3D: 3D Prioritization Algorithm
Three-dimensional systematic conservation planning, conducting nested prioritization analyses across multiple depth levels and ensuring efficient resource allocation throughout the water column. It provides a structured workflow designed to address biodiversity conservation and management challenges in the 3 dimensions, while facilitating users’ choices and parameterization (Doxa et al. 2025 <doi:10.1016/j.ecolmodel.2024.110919>).
Authors:
prior3D_0.1.6.tar.gz
prior3D_0.1.6.zip(r-4.7-any)prior3D_0.1.6.zip(r-4.6-any)prior3D_0.1.6.zip(r-4.5-any)
prior3D_0.1.6.tgz(r-4.6-any)prior3D_0.1.6.tgz(r-4.5-any)
prior3D_0.1.6.tar.gz(r-4.7-any)prior3D_0.1.6.tar.gz(r-4.6-any)
prior3D_0.1.6.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
prior3D/json (API)
| # Install 'prior3D' in R: |
| install.packages('prior3D', repos = c('https://cadam00.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/cadam00/prior3d/issues
Pkgdown/docs site:https://cadam00.github.io
Datasets:
- biodiv_df - Example biodiversity data.frame
biodiversityconservationconservation-planningdepthmarine-spatial-planningmultidimensional-environmentsprioritization
Last updated from:e1a39f8722. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 290 | ||
| source / vignettes | OK | 257 | ||
| linux-release | OK | 352 | ||
| macos-release | OK | 156 | ||
| macos-oldrel | OK | 168 | ||
| windows-devel | OK | 189 | ||
| windows-release | OK | 225 | ||
| windows-oldrel | OK | 195 | ||
| wasm-release | OK | 164 |
Exports:coherenceCompare_2D_3Devaluate_3Dget_biodiv_rasterget_depth_rasterget_rastplot_3Dplot_Compare_2D_3Dplot_sumrastprioritize_3Dsplit_rastsumrastterra_jaccard
Dependencies:assertthatbackportsbase64encBHcellrangercheckmateclassclassIntclicodetoolscpp11crayonDBIdoParalleldplyre1071exactextractrfarverforeachgenericsgeodivggforceggplot2gluegridExtragtablehighshmsisobanditeratorsjsonliteKernSmoothlabelinglatticelifecyclemagrittrmapsMASSMatrixpillarpkgconfigpolyclippracmaprettyunitsprioritizrprogressproxyR6rasterrasterdivRColorBrewerRcppRcppArmadilloreadxlrematchrlangs2S7scalessfspspatialsystemfontsterratibbletidyselecttwdtwtweenrunitsutf8vctrsviridisviridisLitewithrwkzoo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Example biodiversity data.frame | biodiv_df |
| Coherence metrics | coherence |
| Compare 2D vs 3D prioritization algorithms | Compare_2D_3D |
| Evaluate prioritization solution over 3D feature distributions | evaluate_3D |
| Example biodiversity raster | get_biodiv_raster |
| Example depth raster | get_depth_raster |
| Read multiple rast files | get_rast |
| Plot output of prioritize_3D | plot_3D |
| Plot output of Compare_2D_3D | plot_Compare_2D_3D |
| Plot sum list of SpatRaster objects. | plot_sumrast |
| 3D prioritization algorithm | prioritize_3D |
| Split 2D feature distributions into 3D ones | split_rast |
| Sum list of SpatRaster objects. | sumrast |
| Jaccard similarity coefficient among two SpatRaster objects | terra_jaccard |